PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.JJY9M
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 445aa    MW: 51375.6 Da    PI: 7.3366
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.JJY9MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068203225123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y C+ C    +rk++L+rH+r++
  Aradu.JJY9M 203 YFCEFCLNFMKRKEQLQRHMRKC 225
                  78*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541601.01E-2352170IPR016197Chromo domain-like
Gene3DG3DSA:2.30.30.2701.3E-3755129No hitNo description
PfamPF117173.4E-2159117IPR025995RNA binding activity-knot of a chromodomain
CDDcd000241.07E-672117No hitNo description
SMARTSM002986.6E-773132IPR000953Chromo/chromo shadow domain
Gene3DG3DSA:2.30.30.2701.3E-37164214No hitNo description
PROSITE profilePS5172675.584169440IPR002717Histone acetyltransferase domain, MYST-type
SuperFamilySSF557292.24E-111170441IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.304.3E-73228371IPR016181Acyl-CoA N-acyltransferase
PfamPF018533.1E-84230407IPR002717Histone acetyltransferase domain, MYST-type
CDDcd043010.00158281339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010224Biological Processresponse to UV-B
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043995Molecular Functionhistone acetyltransferase activity (H4-K5 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGSLEAPTTT ENGSTATPAG NGKSLATDGT ARVPPPEMTS EKPPDSDSSK RRRSSVLPLE  60
VGTRVMCRWR DGKYHPVKVI ERRKVSSSDP NDYEYYVHYT EFNRRLDEWV KLEQLDLESV  120
EAVVDEKVEE KGATGLKMTR HQKRKIDETH VEGHEELDAA SLREHEEFTK VKNIATIELG  180
RYEIETWYFS PFPPEYNDCL KLYFCEFCLN FMKRKEQLQR HMRKCDLKHP PGDEIYRSGT  240
LSMFEVDGKK NKVYGQNLCY LAKLFLDHKT LYYDVDLFLF YVLCECDDRG CHMVGYFSKE  300
KHSEESYNLA CILTLPPYQR KGYGKFLIAF SYELSKKEGK VGTPERPLSD LGLLSYRGYW  360
TRVLLDILKK HKGNISIKEL SDMTAIKAED ILTTLQSLEL IQYRKGQHVI CADPKVLDRH  420
LKAAGRGGLE VDVSKLIWTP YKEQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dnc_A1e-1181654441282Histone acetyltransferase KAT8
4dnc_B1e-1181654441282Histone acetyltransferase KAT8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954530.10.0PREDICTED: histone acetyltransferase of the MYST family 2-like
RefseqXP_016187633.10.0PREDICTED: histone acetyltransferase of the MYST family 2-like
SwissprotQ9FLF70.0MYST1_ARATH; Histone acetyltransferase of the MYST family 1
TrEMBLA0A151SJR10.0A0A151SJR1_CAJCA; Putative MYST-like histone acetyltransferase 1
STRINGGLYMA06G47380.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70661011